Detailed information of SNP:
|
SNP ID:
sf0520515895(Gbrowse)
Chromosome: chr05 Position: 20515895 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.62% | 42.38% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520515895 | T->G | INTERGENIC | None |