Detailed information of SNP:
|
SNP ID:
sf0520522061(Gbrowse)
Chromosome: chr05 Position: 20522061 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 56.21% | 43.79% |
| All Indica | 798 | 95.11% | 4.89% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520522061 | G->A | LOC_Os05g34690(LOC_Os05g34690.1) | Synonymous |