Detailed information of SNP:
|
SNP ID:
sf0520537897(Gbrowse)
Chromosome: chr05 Position: 20537897 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.64% | 44.36% |
| All Indica | 798 | 94.74% | 5.26% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520537897 | G->A | INTERGENIC | None |