Detailed information of SNP:
|
SNP ID:
sf0520544507(Gbrowse)
Chromosome: chr05 Position: 20544507 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 57.06% | 42.94% |
| All Indica | 790 | 97.34% | 2.66% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 367 | 96.19% | 3.81% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520544507 | T->A | INTERGENIC | None |