Detailed information of SNP:
|
SNP ID:
sf0520554401(Gbrowse)
Chromosome: chr05 Position: 20554401 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 69.61% | 30.39% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 497 | 29.58% | 70.42% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 40.00% | 60.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520554401 | T->C | LOC_Os05g34750(LOC_Os05g34750.1) | Non-Synonymous SNP |