Detailed information of SNP:
|
SNP ID:
sf0520556013(Gbrowse)
Chromosome: chr05 Position: 20556013 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 70.16% | 29.84% |
| All Indica | 795 | 93.58% | 6.42% |
| All Japonica | 497 | 29.98% | 70.02% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 335 | 40.30% | 59.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520556013 | A->G | LOC_Os05g34750(LOC_Os05g34750.1) | Non-Synonymous SNP |