Detailed information of SNP:
|
SNP ID:
sf0520557802(Gbrowse)
Chromosome: chr05 Position: 20557802 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 64.86% | 35.14% |
| All Indica | 780 | 89.62% | 10.38% |
| All Japonica | 497 | 29.98% | 70.02% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 370 | 92.16% | 7.84% |
| Indica II | 208 | 88.94% | 11.06% |
| Indica Intermediate | 202 | 85.64% | 14.36% |
| Temperate Japonica | 335 | 40.30% | 59.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520557802 | A->G | INTERGENIC | None |