Detailed information of SNP:
|
SNP ID:
sf0520558088(Gbrowse)
Chromosome: chr05 Position: 20558088 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 68.17% | 31.83% |
| All Indica | 795 | 91.45% | 8.55% |
| All Japonica | 497 | 29.18% | 70.82% |
| Aus | 53 | 75.47% | 24.53% |
| Indica I | 373 | 90.35% | 9.65% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 39.10% | 60.90% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520558088 | T->C | INTERGENIC | None |