Detailed information of SNP:
|
SNP ID:
sf0520571599(Gbrowse)
Chromosome: chr05 Position: 20571599 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 94.23% | 5.77% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 431 | 84.69% | 15.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 273 | 78.75% | 21.25% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 87.50% | 12.50% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520571599 | G->A | INTERGENIC | None |