Detailed information of SNP:
|
SNP ID:
sf0520591942(Gbrowse)
Chromosome: chr05 Position: 20591942 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1194 | 53.85% | 46.15% |
| All Indica | 594 | 12.12% | 87.88% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 60 | 81.67% | 18.33% |
| Indica I | 280 | 10.71% | 89.29% |
| Indica II | 150 | 15.33% | 84.67% |
| Indica Intermediate | 164 | 11.59% | 88.41% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 32 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520591942 | C->T | INTERGENIC | None |