Detailed information of SNP:
|
SNP ID:
sf0520723152(Gbrowse)
Chromosome: chr05 Position: 20723152 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 93.27% | 6.73% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 462 | 80.74% | 19.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 320 | 97.19% | 2.81% |
| Tropical Japonica | 84 | 26.19% | 73.81% |
| Japonica Intermediate | 58 | 68.97% | 31.03% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520723152 | C->T | INTERGENIC | None |