Detailed information of SNP:
|
SNP ID:
sf0520759411(Gbrowse)
Chromosome: chr05 Position: 20759411 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1268 | 82.18% | 17.82% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 348 | 41.38% | 58.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 210 | 60.95% | 39.05% |
| Tropical Japonica | 87 | 3.45% | 96.55% |
| Japonica Intermediate | 51 | 25.49% | 74.51% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520759411 | T->C | INTERGENIC | None |