Detailed information of SNP:
|
SNP ID:
sf0520765685(Gbrowse)
Chromosome: chr05 Position: 20765685 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 95.15% | 4.85% |
| All Indica | 797 | 93.10% | 6.90% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 53 | 90.57% | 9.43% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520765685 | T->C | INTERGENIC | None |