Detailed information of SNP:
|
SNP ID:
sf0520767271(Gbrowse)
Chromosome: chr05 Position: 20767271 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1267 | 71.98% | 28.02% |
| All Indica | 796 | 99.50% | 0.50% |
| All Japonica | 350 | 5.71% | 94.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 236 | 6.78% | 93.22% |
| Tropical Japonica | 68 | 1.47% | 98.53% |
| Japonica Intermediate | 46 | 6.52% | 93.48% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520767271 | G->A | INTERGENIC | None |