Detailed information of SNP:
|
SNP ID:
sf0520777945(Gbrowse)
Chromosome: chr05 Position: 20777945 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 95.85% | 4.15% |
| All Indica | 778 | 93.06% | 6.94% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 367 | 94.28% | 5.72% |
| Indica II | 206 | 92.23% | 7.77% |
| Indica Intermediate | 205 | 91.71% | 8.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520777945 | A->G | LOC_Os05g35100(LOC_Os05g35100.1) | Synonymous |