Detailed information of SNP:
|
SNP ID:
sf0520801158(Gbrowse)
Chromosome: chr05 Position: 20801158 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1342 | 92.92% | 7.08% |
| All Indica | 729 | 88.07% | 11.93% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 341 | 90.91% | 9.09% |
| Indica II | 190 | 82.11% | 17.89% |
| Indica Intermediate | 198 | 88.89% | 11.11% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520801158 | T->C | LOC_Os05g35120(LOC_Os05g35120.1) | INTRON |