Detailed information of SNP:
|
SNP ID:
sf0520852402(Gbrowse)
Chromosome: chr05 Position: 20852402 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 61.24% | 38.76% |
| All Indica | 794 | 98.61% | 1.39% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520852402 | C->A | INTERGENIC | None |