Detailed information of SNP:
|
SNP ID:
sf0520982467(Gbrowse)
Chromosome: chr05 Position: 20982467 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 60.20% | 39.80% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 495 | 2.42% | 97.58% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 333 | 2.70% | 97.30% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0520982467 | C->T | INTERGENIC | None |