Detailed information of SNP:
|
SNP ID:
sf0521056544(Gbrowse)
Chromosome: chr05 Position: 21056544 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1370 | 94.74% | 5.26% |
| All Indica | 755 | 90.86% | 9.14% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 344 | 92.44% | 7.56% |
| Indica II | 204 | 82.84% | 17.16% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521056544 | T->C | INTERGENIC | None |