Detailed information of SNP:
|
SNP ID:
sf0521276113(Gbrowse)
Chromosome: chr05 Position: 21276113 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 93.13% | 6.87% |
| All Indica | 790 | 99.62% | 0.38% |
| All Japonica | 487 | 81.72% | 18.28% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 75.68% | 24.32% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 86.15% | 13.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521276113 | T->G | LOC_Os05g36040(LOC_Os05g36040.1) | Non-Synonymous SNP |