Detailed information of SNP:
|
SNP ID:
sf0521276180(Gbrowse)
Chromosome: chr05 Position: 21276180 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 96.88% | 3.12% |
| All Indica | 795 | 99.37% | 0.63% |
| All Japonica | 492 | 92.28% | 7.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 66.30% | 33.70% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521276180 | G->A | LOC_Os05g36040(LOC_Os05g36040.1) | Non-Synonymous SNP |