Detailed information of SNP:
|
SNP ID:
sf0521415752(Gbrowse)
Chromosome: chr05 Position: 21415752 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 90.24% | 9.76% |
| All Indica | 792 | 88.51% | 11.49% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 59 | 33.90% | 66.10% |
| Indica I | 373 | 96.78% | 3.22% |
| Indica II | 210 | 75.71% | 24.29% |
| Indica Intermediate | 209 | 86.60% | 13.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521415752 | C->T | INTERGENIC | None |