Detailed information of SNP:
|
SNP ID:
sf0521442733(Gbrowse)
Chromosome: chr05 Position: 21442733 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1279 | 88.74% | 11.26% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 361 | 61.50% | 38.50% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 243 | 46.50% | 53.50% |
| Tropical Japonica | 74 | 100.00% | 0.00% |
| Japonica Intermediate | 44 | 79.55% | 20.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521442733 | C->T | INTERGENIC | None |