Detailed information of SNP:
|
SNP ID:
sf0521507420(Gbrowse)
Chromosome: chr05 Position: 21507420 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1322 | 98.03% | 1.97% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 405 | 93.83% | 6.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 275 | 91.27% | 8.73% |
| Tropical Japonica | 79 | 100.00% | 0.00% |
| Japonica Intermediate | 51 | 98.04% | 1.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521507420 | C->T | LOC_Os05g36930(LOC_Os05g36930.2) | INTRON |
| sf0521507420 | C->T | LOC_Os05g36930(LOC_Os05g36930.1) | INTRON |