Detailed information of SNP:
|
SNP ID:
sf0521511524(Gbrowse)
Chromosome: chr05 Position: 21511524 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 60.91% | 39.09% |
| All Indica | 794 | 96.47% | 3.53% |
| All Japonica | 494 | 4.05% | 95.95% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 15.22% | 84.78% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521511524 | C->A | INTERGENIC | None |