Detailed information of SNP:
|
SNP ID:
sf0521539318(Gbrowse)
Chromosome: chr05 Position: 21539318 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1311 | 62.78% | 37.22% |
| All Indica | 729 | 37.86% | 62.14% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 31 | 41.94% | 58.06% |
| Indica I | 334 | 32.34% | 67.66% |
| Indica II | 202 | 47.52% | 52.48% |
| Indica Intermediate | 193 | 37.31% | 62.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521539318 | C->T | LOC_Os05g36980(LOC_Os05g36980.1) | INTRON |