Detailed information of SNP:
|
SNP ID:
sf0521596915(Gbrowse)
Chromosome: chr05 Position: 21596915 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 59.62% | 40.38% |
| All Indica | 756 | 97.22% | 2.78% |
| All Japonica | 496 | 0.40% | 99.60% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 357 | 98.88% | 1.12% |
| Indica II | 205 | 96.59% | 3.41% |
| Indica Intermediate | 194 | 94.85% | 5.15% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521596915 | T->C | INTERGENIC | None |