Detailed information of SNP:
|
SNP ID:
sf0521612919(Gbrowse)
Chromosome: chr05 Position: 21612919 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 60.57% | 39.43% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 495 | 4.44% | 95.56% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 22.58% | 77.42% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521612919 | G->A | INTERGENIC | None |