Detailed information of SNP:
|
SNP ID:
sf0521626872(Gbrowse)
Chromosome: chr05 Position: 21626872 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 62.64% | 37.36% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521626872 | C->T | LOC_Os05g37100(LOC_Os05g37100.1) | Non-Synonymous SNP |