Detailed information of SNP:
|
SNP ID:
sf0521638611(Gbrowse)
Chromosome: chr05 Position: 21638611 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 97.12% | 2.88% |
| All Indica | 741 | 95.01% | 4.99% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 343 | 97.38% | 2.62% |
| Indica II | 201 | 95.52% | 4.48% |
| Indica Intermediate | 197 | 90.36% | 9.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521638611 | G->A | LOC_Os05g37130(LOC_Os05g37130.1) | UTR_3_PRIME |
| sf0521638611 | G->A | LOC_Os05g37130(LOC_Os05g37130.5) | INTRON |
| sf0521638611 | G->A | LOC_Os05g37130(LOC_Os05g37130.2) | INTRON |
| sf0521638611 | G->A | LOC_Os05g37130(LOC_Os05g37130.3) | INTRON |
| sf0521638611 | G->A | LOC_Os05g37130(LOC_Os05g37130.4) | INTRON |