Detailed information of SNP:
|
SNP ID:
sf0521654111(Gbrowse)
Chromosome: chr05 Position: 21654111 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 60.97% | 39.03% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 496 | 4.44% | 95.56% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521654111 | T->C | LOC_Os05g37170(LOC_Os05g37170.3) | INTRON |
| sf0521654111 | T->C | LOC_Os05g37170(LOC_Os05g37170.4) | INTRON |
| sf0521654111 | T->C | LOC_Os05g37170(LOC_Os05g37170.5) | INTRON |