Detailed information of SNP:
|
SNP ID:
sf0521686849(Gbrowse)
Chromosome: chr05 Position: 21686849 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 63.78% | 36.22% |
| All Indica | 799 | 44.56% | 55.44% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 60.80% | 39.20% |
| Indica II | 213 | 13.15% | 86.85% |
| Indica Intermediate | 211 | 47.39% | 52.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521686849 | T->G | INTERGENIC | None |