Detailed information of SNP:
|
SNP ID:
sf0521686972(Gbrowse)
Chromosome: chr05 Position: 21686972 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 61.22% | 38.78% |
| All Indica | 791 | 95.20% | 4.80% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 370 | 96.49% | 3.51% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 208 | 90.38% | 9.62% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521686972 | A->C | INTERGENIC | None |