Detailed information of SNP:
|
SNP ID:
sf0521693759(Gbrowse)
Chromosome: chr05 Position: 21693759 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 59.45% | 40.55% |
| All Indica | 798 | 96.37% | 3.63% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521693759 | C->T | INTERGENIC | None |