Detailed information of SNP:
|
SNP ID:
sf0521729189(Gbrowse)
Chromosome: chr05 Position: 21729189 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1370 | 68.32% | 31.68% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 455 | 13.19% | 86.81% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 293 | 17.75% | 82.25% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521729189 | G->T | LOC_Os05g37250(LOC_Os05g37250.1) | Non-Synonymous SNP |