Detailed information of SNP:
|
SNP ID:
sf0521735809(Gbrowse)
Chromosome: chr05 Position: 21735809 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1296 | 78.70% | 21.30% |
| All Indica | 796 | 98.99% | 1.01% |
| All Japonica | 385 | 35.84% | 64.16% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 257 | 48.25% | 51.75% |
| Tropical Japonica | 78 | 7.69% | 92.31% |
| Japonica Intermediate | 50 | 16.00% | 84.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521735809 | A->G | LOC_Os05g37260(LOC_Os05g37260.1) | INTRON |