Detailed information of SNP:
|
SNP ID:
sf0521756629(Gbrowse)
Chromosome: chr05 Position: 21756629 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 67.33% | 32.67% |
| All Indica | 797 | 48.18% | 51.82% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 373 | 61.93% | 38.07% |
| Indica II | 213 | 20.19% | 79.81% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521756629 | C->T | INTERGENIC | None |