Detailed information of SNP:
|
SNP ID:
sf0521794029(Gbrowse)
Chromosome: chr05 Position: 21794029 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1334 | 57.57% | 42.43% |
| All Indica | 727 | 96.70% | 3.30% |
| All Japonica | 495 | 3.84% | 96.16% |
| Aus | 60 | 38.33% | 61.67% |
| Indica I | 350 | 98.86% | 1.14% |
| Indica II | 185 | 98.38% | 1.62% |
| Indica Intermediate | 192 | 91.15% | 8.85% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521794029 | A->T | INTERGENIC | None |