Detailed information of SNP:
|
SNP ID:
sf0521798940(Gbrowse)
Chromosome: chr05 Position: 21798940 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 82.24% | 17.76% |
| All Indica | 788 | 68.78% | 31.22% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 58.42% | 41.58% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 207 | 71.50% | 28.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521798940 | C->T | INTERGENIC | None |