Detailed information of SNP:
|
SNP ID:
sf0521805705(Gbrowse)
Chromosome: chr05 Position: 21805705 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1232 | 80.76% | 19.24% |
| All Indica | 628 | 64.01% | 35.99% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 56 | 100.00% | 0.00% |
| Indica I | 307 | 54.72% | 45.28% |
| Indica II | 161 | 80.12% | 19.88% |
| Indica Intermediate | 160 | 65.62% | 34.38% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521805705 | C->T | LOC_Os05g37380(LOC_Os05g37380.1) | Non-Synonymous SNP |