Detailed information of SNP:
|
SNP ID:
sf0521809240(Gbrowse)
Chromosome: chr05 Position: 21809240 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1361 | 98.09% | 1.91% |
| All Indica | 744 | 96.91% | 3.09% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 367 | 98.64% | 1.36% |
| Indica II | 185 | 96.76% | 3.24% |
| Indica Intermediate | 192 | 93.75% | 6.25% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521809240 | A->G | INTERGENIC | None |