Detailed information of SNP:
|
SNP ID:
sf0521809510(Gbrowse)
Chromosome: chr05 Position: 21809510 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 97.92% | 2.08% |
| All Indica | 778 | 96.53% | 3.47% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 364 | 98.08% | 1.92% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 205 | 95.12% | 4.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521809510 | T->C | INTERGENIC | None |