Detailed information of SNP:
|
SNP ID:
sf0521812771(Gbrowse)
Chromosome: chr05 Position: 21812771 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1168 | 87.93% | 12.07% |
| All Indica | 566 | 77.21% | 22.79% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 58 | 87.93% | 12.07% |
| Indica I | 261 | 80.46% | 19.54% |
| Indica II | 150 | 69.33% | 30.67% |
| Indica Intermediate | 155 | 79.35% | 20.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 33 | 87.88% | 12.12% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521812771 | G->A | INTERGENIC | None |