Detailed information of SNP:
|
SNP ID:
sf0521906192(Gbrowse)
Chromosome: chr05 Position: 21906192 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 68.79% | 31.21% |
| All Indica | 795 | 50.31% | 49.69% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 374 | 63.10% | 36.90% |
| Indica II | 212 | 29.72% | 70.28% |
| Indica Intermediate | 209 | 48.33% | 51.67% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521906192 | G->A | INTERGENIC | None |