Detailed information of SNP:
|
SNP ID:
sf0521952261(Gbrowse)
Chromosome: chr05 Position: 21952261 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1335 | 83.37% | 16.63% |
| All Indica | 717 | 69.60% | 30.40% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 318 | 53.77% | 46.23% |
| Indica II | 208 | 89.42% | 10.58% |
| Indica Intermediate | 191 | 74.35% | 25.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521952261 | C->T | INTERGENIC | None |