Detailed information of SNP:
|
SNP ID:
sf0521955613(Gbrowse)
Chromosome: chr05 Position: 21955613 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 53.87% | 46.13% |
| All Indica | 776 | 90.08% | 9.92% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 362 | 91.99% | 8.01% |
| Indica II | 209 | 89.95% | 10.05% |
| Indica Intermediate | 205 | 86.83% | 13.17% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521955613 | C->T | LOC_Os05g37620(LOC_Os05g37620.1) | SNPs that introduce stop codons |