Detailed information of SNP:
|
SNP ID:
sf0521956388(Gbrowse)
Chromosome: chr05 Position: 21956388 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1326 | 85.75% | 14.25% |
| All Indica | 708 | 74.58% | 25.42% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 313 | 64.22% | 35.78% |
| Indica II | 207 | 87.92% | 12.08% |
| Indica Intermediate | 188 | 77.13% | 22.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521956388 | C->T | LOC_Os05g37620(LOC_Os05g37620.1) | INTRON |