Detailed information of SNP:



SNP ID: sf0521956388(Gbrowse)

Chromosome: chr05

Position: 21956388
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1326 85.75% 14.25%
All Indica708 74.58% 25.42%
All Japonica497 100.00% 0.00%
Aus66 92.42% 7.58%
Indica I313 64.22% 35.78%
Indica II207 87.92% 12.08%
Indica Intermediate188 77.13% 22.87%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 90.24% 9.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0521956388 C->T LOC_Os05g37620(LOC_Os05g37620.1) INTRON