Detailed information of SNP:
|
SNP ID:
sf0521957597(Gbrowse)
Chromosome: chr05 Position: 21957597 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 52.92% | 47.08% |
| All Indica | 787 | 87.93% | 12.07% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 370 | 90.27% | 9.73% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 207 | 81.16% | 18.84% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521957597 | G->A | LOC_Os05g37620(LOC_Os05g37620.1) | Non-Synonymous SNP |