Detailed information of SNP:
|
SNP ID:
sf0521964531(Gbrowse)
Chromosome: chr05 Position: 21964531 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 93.01% | 6.99% |
| All Indica | 757 | 87.71% | 12.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 364 | 87.91% | 12.09% |
| Indica II | 189 | 83.07% | 16.93% |
| Indica Intermediate | 204 | 91.67% | 8.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0521964531 | G->C | INTERGENIC | None |