Detailed information of SNP:
|
SNP ID:
sf0522019680(Gbrowse)
Chromosome: chr05 Position: 22019680 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 59.04% | 40.96% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522019680 | A->C | LOC_Os05g37730(LOC_Os05g37730.1) | Non-Synonymous SNP |